STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM52406.1N-acetylmuramoyl-L-alanine amidase; KEGG: ctc:CTC02570 4.9e-36 germination-specific N-acetylmuramoyl-L-alanine amidase K01448; COG: COG0860 N-acetylmuramoyl-L-alanine amidase. (243 aa)    
Predicted Functional Partners:
EDM50185.1
KEGG: bsu:BG10825 2.2e-33 cwlC; N-acetylmuramoyl-L-alanine amidase, peptidoglycan hydrolase, LytC amidase family K01448; COG: COG0860 N-acetylmuramoyl-L-alanine amidase; Psort location: Cytoplasmic, score: 8.87.
  
0.908
EDM51224.1
KEGG: spd:SPD_1920 3.2e-23 peptidase, S54 (rhomboid) family protein; COG: COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid); Psort location: CytoplasmicMembrane, score: 9.97.
  
   0.840
EDM51437.1
Conserved domain protein; KEGG: ctc:CTC00579 0.011 sbcC; exonuclease sbcC K03546; Psort location: Cytoplasmic, score: 8.87.
    
   0.662
EDM52528.1
Hypothetical protein; KEGG: pgi:PG0958 0.046 ribonuclease BN, putative; COG: COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid); Psort location: CytoplasmicMembrane, score: 9.99.
  
   0.617
EDM52405.1
Sua5/YciO/YrdC/YwlC family protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.
       0.574
EDM52404.1
KEGG: bli:BL03988 6.0e-15 ywlE; low molecular weight phosphotyrosine protein phosphatase K01104; COG: COG0394 Protein-tyrosine-phosphatase.
       0.563
EDM52408.1
Hydrolase, TatD family; KEGG: btl:BALH_0035 1.1e-63 deoxyribonuclease, TatD family K01157; COG: COG0084 Mg-dependent DNase; Psort location: Cytoplasmic, score: 8.87.
     
 0.524
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
  
    0.516
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
  
   
 0.510
ksgA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
       0.497
Your Current Organism:
Eubacterium ventriosum
NCBI taxonomy Id: 411463
Other names: E. ventriosum ATCC 27560, Eubacterium ventriosum ATCC 27560
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