STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
radCDNA repair protein RadC; KEGG: tma:TM0191 0.26 putative iron(III) transport system ATP-binding protein K02013; COG: COG2003 DNA repair proteins. (180 aa)    
Predicted Functional Partners:
EDM52191.1
Hypothetical protein; KEGG: ayw:AYWB_285 0.00077 dnaG; DNA primase; COG: NOG14428 non supervised orthologous group.
 
   
 0.802
maf
Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
 
  
 0.714
mreC
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
  
  
 0.616
EDM50573.1
comF family protein; KEGG: chu:CHU_3495 2.3e-22 purF; amidophosphoribosyltransferase K00764; COG: COG1040 Predicted amidophosphoribosyltransferases; Psort location: Cytoplasmic, score: 8.87.
 
    0.565
EDM52187.1
KEGG: pub:SAR11_0712 0.0013 hypothetical SurA-like protein K03771; Psort location: Cytoplasmic, score: 8.87.
       0.511
mutS
DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.
 
   
 0.505
EDM52004.1
Conserved domain protein; KEGG: bmf:BAB1_0721 0.65 short-chain dehydrogenase/reductase SDR:glucose/ribitol dehydrogenase K00059; COG: NOG16917 non supervised orthologous group.
  
    0.479
mutL
DNA mismatch repair domain protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.
 
   
 0.470
dprA
DNA protecting protein DprA; KEGG: pfa:PFF1225c 0.61 DNA polymerase I K00961; COG: COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.
  
  
 0.457
EDM50780.1
Response regulator receiver domain protein; KEGG: ava:Ava_1777 2.1e-13 metal dependent phosphohydrolase, HD region with response regulator receiver modulation K07814; COG: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; Psort location: Cytoplasmic, score: 9.98.
   
    0.448
Your Current Organism:
Eubacterium ventriosum
NCBI taxonomy Id: 411463
Other names: E. ventriosum ATCC 27560, Eubacterium ventriosum ATCC 27560
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