STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM50708.1Oligopeptide transporter, OPT family; KEGG: nfa:nfa15870 0.015 putative cytochrome d ubiquinol oxidase subunit II K00426; COG: COG1297 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 9.99. (649 aa)    
Predicted Functional Partners:
EDM50707.1
Hypothetical protein; KEGG: lin:lin1156 0.033 similar to precorrin isomerase K03400; COG: NOG20192 non supervised orthologous group.
 
     0.915
EDM50706.1
Hypothetical protein; KEGG: uur:UU377 0.078 polC; DNA polymerase III alpha chain 1 K03763.
 
     0.868
pepD
Xaa-His dipeptidase; KEGG: cpf:CPF_2403 1.1e-107 pepD; aminoacyl-histidine dipeptidase K01270; COG: COG2195 Di- and tripeptidases; Psort location: Cytoplasmic, score: 8.87.
 
     0.668
EDM50709.1
Conserved domain protein; KEGG: tcr:507297.10 0.999 cruzipain precursor K08571; COG: NOG12741 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
       0.503
atpB
ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.
   
    0.436
Your Current Organism:
Eubacterium ventriosum
NCBI taxonomy Id: 411463
Other names: E. ventriosum ATCC 27560, Eubacterium ventriosum ATCC 27560
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.