STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM50468.1MATE efflux family protein; KEGG: sil:SPO2766 0.071 nuoK; NADH dehydrogenase I, K subunit K00340; COG: COG0534 Na+-driven multidrug efflux pump; Psort location: CytoplasmicMembrane, score: 9.99. (442 aa)    
Predicted Functional Partners:
EDM50469.1
Transcriptional regulator, MarR family; KEGG: cal:orf19.2847 0.12 RPC82; subunit of RNA polymerase III (C) K03023; COG: NOG11966 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
    0.788
EDM51889.1
MATE domain protein; KEGG: cpr:CPR_2167 0.36 atpE; ATP synthase F0, C subunit K02110; COG: COG0534 Na+-driven multidrug efflux pump; Psort location: CytoplasmicMembrane, score: 9.26.
  
     0.727
EDM50470.1
Hypothetical protein; KEGG: ssp:SSP1704 0.61 cytochrome bd-type quinol oxidase subunit 2 K00426; Psort location: CytoplasmicMembrane, score: 9.99.
       0.432
EDM50471.1
KEGG: ava:Ava_2028 0.020 two component transcriptional regulator, LuxR family; COG: COG2771 DNA-binding HTH domain-containing proteins.
       0.432
Your Current Organism:
Eubacterium ventriosum
NCBI taxonomy Id: 411463
Other names: E. ventriosum ATCC 27560, Eubacterium ventriosum ATCC 27560
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