STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM50476.1Transcriptional regulator, AraC family; KEGG: bca:BCE_3772 3.1e-13 adaA; Ada regulatory protein/6-O-methylguanine-DNA methyltransferase K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins; Psort location: Cytoplasmic, score: 9.98. (293 aa)    
Predicted Functional Partners:
EDM49886.1
Transcriptional regulator, AraC family; KEGG: bce:BC3740 1.8e-10 ADA regulatory protein K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins; Psort location: Cytoplasmic, score: 9.65.
 
 
0.942
EDM51024.1
Transcriptional regulator, AraC family; KEGG: bcz:BCZK2914 1.2e-11 adaA; methylphosphotriester-DNA alkyltransferase K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins; Psort location: Cytoplasmic, score: 8.87.
 
 
0.768
EDM50997.1
Cupin domain protein; KEGG: psp:PSPPH_2917 3.3e-06 DNA-binding protein K00517; COG: COG1396 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.564
glgP-2
Phosphorylase, glycogen/starch/alpha-glucan family; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
       0.542
EDM50994.1
ABC transporter, solute-binding protein; KEGG: hpa:HPAG1_0451 3.9e-09 molybdenum ABC transporter ModB K06022; COG: COG0687 Spermidine/putrescine-binding periplasmic protein; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.524
EDM50666.1
KEGG: hpa:HPAG1_0089 1.3e-15 RNA polymerase sigma-80 factor K00960; COG: COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); Psort location: Cytoplasmic, score: 9.65; Belongs to the sigma-70 factor family.
    
 
 0.512
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.512
EDM50383.1
RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; KEGG: hpa:HPAG1_0089 2.1e-16 RNA polymerase sigma-80 factor K00960; COG: COG1191 DNA-directed RNA polymerase specialized sigma subunit; Psort location: Cytoplasmic, score: 9.98; Belongs to the sigma-70 factor family.
    
 
 0.512
EDM51854.1
KEGG: cpf:CPF_2685 2.7e-51 rpoA; DNA-directed RNA polymerase, alpha subunit K03040; COG: COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit; Psort location: Cytoplasmic, score: 9.98.
    
 
 0.480
rpoA
KEGG: ljo:LJ0361 5.8e-33 DNA-directed RNA polymerase alpha chain K03040; COG: COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit; Psort location: Cytoplasmic, score: 9.98.
    
 
 0.480
Your Current Organism:
Eubacterium ventriosum
NCBI taxonomy Id: 411463
Other names: E. ventriosum ATCC 27560, Eubacterium ventriosum ATCC 27560
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