STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDN01843.1Hypothetical protein; KEGG: sce:YBR067C 0.0011 TIP1; Major cell wall mannoprotein with possible lipase activity; transcription is induced by heat- and cold-shock; member of the Srp1p/Tip1p family of serine-alanine-rich proteins K01066; COG: COG5295 Autotransporter adhesin. (259 aa)    
Predicted Functional Partners:
EDN01845.1
Polysaccharide biosynthesis protein; KEGG: lsl:LSL_0995 1.9e-121 UDP-N-acetylglucosamine 4,6-dehydratase / UDP-D-quinovosamine 4-dehydrogenase K00100:K01726; COG: COG1086 Predicted nucleoside-diphosphate sugar epimerases; Psort location: CytoplasmicMembrane, score:9.16.
       0.732
EDN01842.1
PHP domain protein; KEGG: pca:Pcar_1540 6.4e-34 phosphotyrosine-protein phosphatase (capsular polysaccharide biosynthesis) K01104; COG: COG4464 Capsular polysaccharide biosynthesis protein.
       0.705
EDN01846.1
Hypothetical protein; COG: NOG17531 non supervised orthologous group; Psort location: CytoplasmicMembrane, score:10.00.
       0.482
EDN01847.1
Glycosyltransferase, group 1 family protein; KEGG: lsl:LSL_0991 4.7e-70 rfaG; glycosyltransferase K00754; COG: COG0438 Glycosyltransferase; Psort location: Cytoplasmic, score:8.96.
       0.482
EDN01848.1
Bacterial sugar transferase; KEGG: aba:Acid345_3821 2.0e-32 undecaprenyl-phosphate galactosephosphotransferase K00996; COG: COG2148 Sugar transferases involved in lipopolysaccharide synthesis; Psort location: CytoplasmicMembrane, score:9.97.
       0.482
EDN01841.1
Hypothetical protein; KEGG: bce:BC2506 3.1e-16 bacillolysin K01400; COG: NOG16062 non supervised orthologous group.
       0.462
EDN01849.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.96.
       0.456
EDN01850.1
Hypothetical protein; COG: NOG21821 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
       0.456
EDN01851.1
Ser/Thr phosphatase family protein; KEGG: lwe:lwe2128 4.2e-30 phosphohydrolase, putative; COG: COG1408 Predicted phosphohydrolases.
       0.440
EDN01852.1
Hypothetical protein; COG: NOG21603 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
       0.440
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.