STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDN01860.1Hypothetical protein. (478 aa)    
Predicted Functional Partners:
EDN01863.1
Hypothetical protein; COG: COG3291 FOG: PKD repeat.
      
0.765
EDN01861.1
MBOAT family protein; KEGG: hne:HNE_2072 4.7e-86 algI; alginate biosynthesis protein AlgI K00680; COG: COG1696 Predicted membrane protein involved in D-alanine export; Psort location: CytoplasmicMembrane, score:10.00; Belongs to the membrane-bound acyltransferase family.
       0.764
EDN01862.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score:9.50.
       0.757
EDN01864.1
Transcriptional regulator, DeoR family; COG: COG1349 Transcriptional regulators of sugar metabolism.
       0.757
EDN01865.1
Hypothetical protein.
       0.555
EDN01866.1
Glycosyl hydrolase family 3 N-terminal domain protein; KEGG: aha:AHA_2689 4.5e-19 beta-glucosidase K01188; COG: COG1472 Beta-glucosidase-related glycosidases; Psort location: OuterMembrane, score:8.97.
       0.502
EDN01867.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score:9.46.
       0.502
EDN01859.1
KEGG: pen:PSEEN2819 9.4e-49 ABC efflux transporter, permease/ATP-binding protein; COG: COG1132 ABC-type multidrug transport system, ATPase and permease components; Psort location: CytoplasmicMembrane, score:10.00.
       0.465
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.