STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhaDRhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde. (270 aa)    
Predicted Functional Partners:
EDN01870.1
Carbohydrate kinase, FGGY family protein; KEGG: bcl:ABC0374 8.4e-96 rhamnulokinase and L-rhamnose isomerase K00848:K01813; COG: COG1070 Sugar (pentulose and hexulose) kinases.
 
 0.997
rhaA
KEGG: oih:OB0496 7.2e-122 L-rhamnose isomerase K01813; COG: COG4806 L-rhamnose isomerase; Belongs to the rhamnose isomerase family.
  
 0.982
tpiA
Triose-phosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
  
 
 0.867
EDN01081.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.96.
    
  0.853
fba
Fructose-1,6-bisphosphate aldolase, class II; KEGG: bfr:BF3299 1.3e-106 fructose-bisphosphate aldolase K01624; COG: COG0191 Fructose/tagatose bisphosphate aldolase; Psort location: Cytoplasmic, score:8.96.
  
 
 0.843
fucO
Lactaldehyde reductase; KEGG: cpf:CPF_1046 9.8e-141 fucO; lactaldehyde reductase K00048; COG: COG1454 Alcohol dehydrogenase, class IV; Psort location: Cytoplasmic, score:9.26.
 
  
 0.767
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
 
 0.700
EDN01868.1
Alpha-L-rhamnosidase N-terminal domain protein; KEGG: bcz:BCZK2019 5.2e-135 ramA; alfa-L-rhamnosidase; COG: NOG04002 non supervised orthologous group.
 
     0.664
mtnA
S-methyl-5-thioribose-1-phosphate isomerase; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).
  
 
 0.652
EDN01869.1
Hypothetical protein; KEGG: eci:UTI89_C4210 1.5e-14 yicJ; hypothetical symporter YicJ K03292; COG: COG2211 Na+/melibiose symporter and related transporters; Psort location: CytoplasmicMembrane, score:10.00.
  
  
 0.625
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.