STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDN01655.1Germination protein, Ger(x)C family; COG: NOG13200 non supervised orthologous group. (365 aa)    
Predicted Functional Partners:
EDN01657.1
Hypothetical protein; COG: NOG05957 non supervised orthologous group; Psort location: CytoplasmicMembrane, score:10.00.
 
  
 0.966
EDN01654.1
Spore germination protein (amino acid permease); KEGG: aba:Acid345_1300 0.00037 H+-transporting two-sector ATPase, C subunit K02110; COG: NOG13194 non supervised orthologous group; Psort location: CytoplasmicMembrane, score:10.00.
 
  
 0.949
ypeB
Germination protein YpeB; COG: NOG06156 non supervised orthologous group.
 
     0.738
EDM97776.1
Putative sporulation integral membrane protein YlbJ; COG: COG3314 Uncharacterized protein conserved in bacteria; Psort location: CytoplasmicMembrane, score:10.00.
  
     0.729
EDN00204.1
Putative stage III sporulation protein AB; COG: NOG16867 non supervised orthologous group.
  
     0.718
EDN01658.1
Hypothetical protein; COG: NOG10847 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
 
     0.694
EDN00276.1
sigma-E processing peptidase SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
     0.658
EDN01160.1
Putative stage II sporulation protein E; KEGG: tte:TTE2396 2.7e-58 rsbU; serine phosphatase RsbU, regulator of sigma subunit K06382; COG: COG2208 Serine phosphatase RsbU, regulator of sigma subunit; Psort location: CytoplasmicMembrane, score:10.00.
  
     0.648
EDM99834.1
Putative sporulation protein YqfD; COG: NOG07866 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
  
     0.640
EDM99833.1
Putative sporulation protein YqfC; COG: NOG13846 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
  
     0.634
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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