STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDN01803.1COG: COG1971 Predicted membrane protein; Psort location: CytoplasmicMembrane, score:9.46. (183 aa)    
Predicted Functional Partners:
EDN00718.1
Hypothetical protein; COG: NOG04780 non supervised orthologous group.
  
     0.589
pepD
Xaa-His dipeptidase; KEGG: aba:Acid345_1504 6.7e-71 peptidase M20C, Xaa-His dipeptidase K01270; COG: COG2195 Di- and tripeptidases; Psort location: Cytoplasmic, score:8.96.
       0.586
EDM98355.1
Hypothetical protein; KEGG: eci:UTI89_C1627 8.7e-09 entS; EntS/YbdA MFS transporter; COG: NOG20194 non supervised orthologous group.
  
     0.576
EDM98940.1
Hypothetical protein; KEGG: bcz:BCZK3380 8.7e-14 cwl; N-acetylmuramoyl-L-alanine amidase, family 2, C-terminal region K01446; COG: COG2866 Predicted carboxypeptidase; Psort location: Extracellular, score:9.65.
  
     0.493
EDN01801.1
Hypothetical protein; COG: COG3481 Predicted HD-superfamily hydrolase.
       0.485
EDN01802.1
MATE efflux family protein; COG: COG0534 Na+-driven multidrug efflux pump; Psort location: CytoplasmicMembrane, score:10.00.
       0.485
EDM98264.1
TQXA domain protein; COG: COG4932 Predicted outer membrane protein; Psort location: Extracellular, score:9.65.
  
    0.473
EDM98247.1
Hypothetical protein; COG: COG3595 Uncharacterized conserved protein; Psort location: OuterMembrane, score:9.49.
  
     0.466
EDN00728.1
Cyclic nucleotide-binding domain protein; COG: COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; Psort location: Cytoplasmic, score:8.96.
  
     0.430
EDN00429.1
Cna protein B-type domain protein; COG: COG4932 Predicted outer membrane protein.
  
    0.421
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.