STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDN01389.1Hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type; KEGG: cac:CAC3091 8.2e-82 fumarate hydratase, subunit A (N-terminal domain of FumA E.coli) class I K01677; COG: COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain; Psort location: Cytoplasmic, score:8.96. (280 aa)    
Predicted Functional Partners:
EDM99811.1
Hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type; KEGG: ctc:CTC02561 5.4e-53 fumarate hydratase subunit B K01678; COG: COG1838 Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain.
 
 0.998
EDM99677.1
Malic enzyme, NAD binding domain protein; KEGG: mta:Moth_0401 5.1e-121 malate dehydrogenase (oxaloacetate decarboxylating) K00027; COG: COG0281 Malic enzyme.
  
 
 0.896
EDM99153.1
KEGG: mta:Moth_1122 1.2e-142 citrate (Si)-synthase K01647; COG: COG0372 Citrate synthase; Psort location: Cytoplasmic, score:9.97.
  
 
 0.863
EDM97958.1
KEGG: mta:Moth_1122 3.8e-132 citrate (Si)-synthase K01647; COG: COG0372 Citrate synthase; Psort location: Cytoplasmic, score:9.97.
  
 
 0.863
EDN00714.1
4Fe-4S binding domain protein; KEGG: cch:Cag_0580 4.0e-78 glutamate synthase (NADPH) small chain K00264; COG: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases; Psort location: Cytoplasmic, score:9.97.
    
 0.839
EDN01996.1
FAD binding domain protein; KEGG: ctc:CTC00811 5.0e-66 fumarate reductase flavoprotein subunit precursor K00244; COG: COG3976 Uncharacterized protein conserved in bacteria; Psort location: Periplasmic, score:9.44.
  
 
 0.832
EDN02037.1
FMN-binding domain protein; KEGG: lpl:lp_0952 9.1e-06 fumarate reductase, flavoprotein subunit precursor K00238; COG: COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
  
 
 0.832
EDN01633.1
KEGG: ctc:CTC01847 1.0e-74 fumarate reductase flavoprotein subunit K00244; COG: COG3976 Uncharacterized protein conserved in bacteria; Psort location: Periplasmic, score:9.76.
  
 
 0.832
EDN01146.1
FAD binding domain protein; KEGG: ctc:CTC00811 2.9e-54 fumarate reductase flavoprotein subunit precursor K00244; COG: COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; Psort location: Periplasmic, score:9.76.
  
 
 0.832
EDN00595.1
Hypothetical protein; KEGG: ctc:CTC00811 7.8e-48 fumarate reductase flavoprotein subunit precursor K00244; COG: COG3976 Uncharacterized protein conserved in bacteria; Psort location: Periplasmic, score:9.76.
  
 
 0.832
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.