STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDN01402.1Putative oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. (409 aa)    
Predicted Functional Partners:
EDN00551.1
KEGG: bsu:BG12999 3.9e-75 hemZ, yhaV, yhaW; coproporphyrinogen III oxidase K02495; COG: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; Psort location: Cytoplasmic, score:9.97.
  
  
 
0.861
lepA
GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
  
 0.821
EDM98124.1
Methyltransferase, MtaA/CmuA family; KEGG: mac:MA0146 1.1e-31 mtbA; methylcobalamin:CoM methyltransferase isozyme A K00599; COG: COG0407 Uroporphyrinogen-III decarboxylase; Psort location: Cytoplasmic, score:8.96.
  
 
 0.771
EDM97450.1
Methyltransferase, MtaA/CmuA family; KEGG: mac:MA0146 1.0e-26 mtbA; methylcobalamin:CoM methyltransferase isozyme A K00599; COG: COG0407 Uroporphyrinogen-III decarboxylase; Psort location: Cytoplasmic, score:8.96.
  
 
 0.771
nifJ
KEGG: ctc:CTC01741 0. pyruvate-flavodoxin oxidoreductase K03737; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit.
 
   
 0.703
rlmN
23S rRNA m2A2503 methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
 
   
 0.697
EDN00706.1
Hypothetical protein; KEGG: swo:Swol_0417 3.0e-05 uroporphyrinogen decarboxylase K01599; COG: NOG13231 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
  
 
 0.650
EDM97452.1
KEGG: mma:MM1439 1.9e-06 mtbA; methylcobalamin:coenzyme M methyltransferase K00599; COG: NOG13231 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96; Belongs to the uroporphyrinogen decarboxylase family.
  
 
 0.650
yqeV
tRNA methylthiotransferase YqeV; KEGG: ctc:CTC02027 1.7e-90 Fe-S oxidoreductase; COG: COG0621 2-methylthioadenine synthetase; Psort location: Cytoplasmic, score:8.96.
 
   
 0.602
cobA
uroporphyrinogen-III C-methyltransferase; KEGG: dvu:DVU0734 4.7e-102 uroporphyrinogen III synthase/methyltransferase K02302:K01719; COG: COG1587 Uroporphyrinogen-III synthase; Psort location: Cytoplasmic, score:8.96.
  
  
 0.580
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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