STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDN01448.1Hypothetical protein. (66 aa)    
Predicted Functional Partners:
EDN01447.1
DNA-binding helix-turn-helix protein; COG: COG1396 Predicted transcriptional regulators.
       0.658
EDN01449.1
ABC transporter, ATP-binding protein; KEGG: bur:Bcep18194_A5826 3.0e-68 ABC branched-chain amino acid family transporter, ATPase subunit K01996; COG: COG0410 ABC-type branched-chain amino acid transport systems, ATPase component; Psort location: CytoplasmicMembrane, score:9.82.
       0.598
EDN01450.1
ABC transporter, ATP-binding protein; KEGG: pen:PSEEN1283 1.3e-58 livG; branched-chain amino acid ABC transporter, ATP-binding protein; COG: COG0411 ABC-type branched-chain amino acid transport systems, ATPase component; Psort location: CytoplasmicMembrane, score:7.88.
       0.598
EDN01451.1
KEGG: reh:H16_A3653 6.1e-25 ABC-type transporter, ATPase and permease components; COG: COG4177 ABC-type branched-chain amino acid transport system, permease component; Psort location: CytoplasmicMembrane, score:10.00.
       0.485
EDN01452.1
KEGG: fal:FRAAL0330 1.0e-25 putative branched chain amino acid ABC transporter ATP-binding protein K06020; COG: COG0559 Branched-chain amino acid ABC-type transport system, permease components; Psort location: CytoplasmicMembrane, score:10.00.
       0.482
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.