STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDN01493.1Hypothetical protein; COG: COG1306 Uncharacterized conserved protein. (378 aa)    
Predicted Functional Partners:
EDM97339.1
Hypothetical protein; COG: NOG16914 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
  
     0.663
EDM97749.1
Hypothetical protein; COG: NOG09578 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
  
     0.586
EDN01494.1
Transcriptional regulator, MarR family; COG: COG1846 Transcriptional regulators.
 
     0.581
EDN02063.1
Bacterial group 2 Ig-like protein; KEGG: chu:CHU_1335 2.4e-07 CHU large protein; endoglucanase-related protein, glucosyl hydrolase family 9 protein K01238; COG: COG5492 Bacterial surface proteins containing Ig-like domains.
  
     0.580
sap
S-layer protein Sap; KEGG: bcz:BCZK1628 2.1e-10 amiB; S-layer protein and N-acetylmuramoyl-L-alanine amidase fusion protein K01448; COG: NOG33931 non supervised orthologous group.
  
     0.507
EDM99680.1
Hypothetical protein.
  
     0.501
EDN01401.1
KEGG: ava:Ava_3135 1.6e-09 hypothetical protein; COG: COG4632 Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase.
  
     0.494
EDN00276.1
sigma-E processing peptidase SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
     0.422
EDN00650.1
Hypothetical protein.
  
     0.421
EDM98940.1
Hypothetical protein; KEGG: bcz:BCZK3380 8.7e-14 cwl; N-acetylmuramoyl-L-alanine amidase, family 2, C-terminal region K01446; COG: COG2866 Predicted carboxypeptidase; Psort location: Extracellular, score:9.65.
  
     0.420
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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