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EDN01615.1 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"EDN01615.1" - Uncharacterized protein in Pseudoflavonifractor capillosus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDN01615.1Uncharacterized protein; Psort location- CytoplasmicMembrane, score-9.50 (248 aa)    
Predicted Functional Partners:
EDN01616.1
DNA-binding helix-turn-helix protein; KEGG- mmo-MMOB3450 0.0013 dam; adenine-specific DNA methyltransferase K06223; COG- COG1476 Predicted transcriptional regulators (71 aa)
              0.867
EDM98368.1
Uncharacterized protein; KEGG- azo-azo0200 3.5e-06 sbcC; exonuclease SbcC, putative K01146; COG- COG0791 Cell wall-associated hydrolases (invasion-associated proteins) (702 aa)
   
          0.726
EDN01002.1
Uncharacterized protein; Psort location- OuterMembrane, score-9.49 (929 aa)
   
          0.717
EDN01885.1
Uncharacterized protein; Psort location- CytoplasmicMembrane, score-9.46 (163 aa)
   
          0.669
EDM97643.1
Uncharacterized protein; COG- COG5660 Predicted integral membrane protein; Psort location- Cytoplasmic, score-8.96 (220 aa)
   
          0.657
EDM98285.1
annotation not available (215 aa)
   
          0.630
EDM98278.1
Uncharacterized protein; KEGG- smu-SMU.317 0.00012 putative tetrahydrodipicolinate succinylase K00674; COG- NOG06285 non supervised orthologous group (211 aa)
   
          0.622
EDN01248.1
Uncharacterized protein; COG- COG0535 Predicted Fe-S oxidoreductases; Psort location- Cytoplasmic, score-8.96 (354 aa)
   
          0.621
EDM97697.1
annotation not available (167 aa)
   
          0.613
EDN00950.1
Uncharacterized protein; KEGG- lsa-LSA0090 3.9e-21 putative extracellular arylsulfate sulfotransferase (N-terminal fragment), authentic frameshift K01023; COG- NOG14107 non supervised orthologous group (585 aa)
   
          0.580
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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