STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDN01157.1Putative superoxide reductase; KEGG: dde:Dde_3193 6.3e-27 desulfoferrodoxin K05919; COG: COG2033 Desulfoferrodoxin. (128 aa)    
Predicted Functional Partners:
EDM97800.1
Hypothetical protein; KEGG: rsp:RSP_3191 6.1e-63 fprA; flavodoxin; COG: COG0426 Uncharacterized flavoproteins; Psort location: Cytoplasmic, score:9.26.
 
  
 0.907
EDN01155.1
Rubredoxin; KEGG: cpr:CPR_0938 2.7e-51 periplasmic [Fe] hydrogenase 1 K00532; COG: COG1592 Rubrerythrin; Psort location: Cytoplasmic, score:8.96.
 
  
 0.901
EDN01243.1
Hydrogenase, Fe-only; KEGG: cpr:CPR_0938 1.8e-157 periplasmic [Fe] hydrogenase 1 K00532; COG: COG4624 Iron only hydrogenase large subunit, C-terminal domain.
  
  
 0.877
EDM99661.1
Rubredoxin; KEGG: sat:SYN_02123 4.5e-17 ferric-chelate reductase / rubredoxin K00521; COG: COG1773 Rubredoxin; Psort location: Cytoplasmic, score:9.97.
 
  
 0.778
EDM97714.1
Cupin domain protein; KEGG: lsa:LSA1190 3.3e-30 putative 4-carboxymuconolactone decarboxylase K01607; COG: COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain.
  
  
 0.581
EDN01156.1
Hypothetical protein.
       0.572
EDN00904.1
Flavodoxin; KEGG: syn:sll0219 1.2e-09 potential FMN-protein; COG: COG0716 Flavodoxins.
  
  
 0.566
EDM97389.1
Flavodoxin; KEGG: syn:sll0219 8.0e-11 potential FMN-protein; COG: COG0716 Flavodoxins.
  
  
 0.566
EDN01158.1
Hypothetical protein.
       0.475
EDN01159.1
Hypothetical protein.
       0.475
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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