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EDN00538.1 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"EDN00538.1" - Uncharacterized protein in Pseudoflavonifractor capillosus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
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Cooccurence
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[Homology]
Score
EDN00538.1Uncharacterized protein; KEGG- btl-BALH_3229 4.5e-10 sigW; RNA polymerase sigma-70 factor, ECF subfamily K00960; COG- COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Psort location- Cytoplasmic, score-8.96 (155 aa)    
Predicted Functional Partners:
EDN00537.1
COG- COG4826 Serine protease inhibitor; Belongs to the serpin family (486 aa)
              0.845
EDM99232.1
Sigma-70 region 2; KEGG- reh-H16_A2563 1.9e-06 rpoE1; DNA-directed RNA polymerase sigma subunit (RpoE,sigma24) K00960; COG- COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Psort location- Cytoplasmic, score-8.96; Belongs to the sigma-70 factor family. ECF subfamily (183 aa)
   
          0.710
EDN00536.1
annotation not available (42 aa)
              0.710
sigV
KEGG- btl-BALH_3229 1.8e-15 sigW; RNA polymerase sigma-70 factor, ECF subfamily K00960; COG- COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Psort location- Cytoplasmic, score-8.96 (185 aa)
   
          0.655
EDM98679.1
Sigma-70 region 2; KEGG- reh-H16_A2563 1.6e-07 rpoE1; DNA-directed RNA polymerase sigma subunit (RpoE,sigma24) K00960; COG- COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily (174 aa)
   
          0.587
EDN00539.1
Uncharacterized protein; KEGG- tbd-Tbd_2668 9.5e-11 phosphoribosylaminoimidazole-succinocarboxamide (SAICAR) synthetase K01923; COG- COG0628 Predicted permease; Psort location- CytoplasmicMembrane, score-10.00 (424 aa)
              0.534
EDM99663.1
Sigma-70 region 2; KEGG- reh-H16_A2563 2.4e-27 rpoE1; DNA-directed RNA polymerase sigma subunit (RpoE,sigma24) K00960; COG- COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Psort location- Cytoplasmic, score-8.96; Belongs to the sigma-70 factor family. ECF subfamily (198 aa)
   
          0.515
EDM99710.1
Sigma-70 region 2; KEGG- reh-H16_A2923 1.3e-10 rpoE4; DNA-directed RNA polymerase sigma subunit (RpoE,sigma24) K00960; COG- COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Psort location- Cytoplasmic, score-8.96; Belongs to the sigma-70 factor family. ECF subfamily (168 aa)
   
          0.505
EDM97642.1
Sigma-70 region 2; KEGG- reh-H16_A1096 1.1e-13 rpoE3; DNA-directed RNA polymerase sigma subunit (RpoE,sigma24) K00960; COG- COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Psort location- Cytoplasmic, score-8.96; Belongs to the sigma-70 factor family. ECF subfamily (156 aa)
   
          0.488
EDM97894.1
Sigma-70 region 2; KEGG- reh-H16_A2923 2.2e-17 rpoE4; DNA-directed RNA polymerase sigma subunit (RpoE,sigma24) K00960; COG- COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily (194 aa)
   
          0.473
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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