STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDN00538.1Hypothetical protein; KEGG: btl:BALH_3229 4.5e-10 sigW; RNA polymerase sigma-70 factor, ECF subfamily K00960; COG: COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Psort location: Cytoplasmic, score:8.96. (155 aa)    
Predicted Functional Partners:
EDN00537.1
COG: COG4826 Serine protease inhibitor; Belongs to the serpin family.
       0.773
sigV
KEGG: btl:BALH_3229 1.8e-15 sigW; RNA polymerase sigma-70 factor, ECF subfamily K00960; COG: COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Psort location: Cytoplasmic, score:8.96.
  
     0.658
EDN00536.1
Hypothetical protein.
       0.642
EDM99232.1
Sigma-70 region 2; KEGG: reh:H16_A2563 1.9e-06 rpoE1; DNA-directed RNA polymerase sigma subunit (RpoE,sigma24) K00960; COG: COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Psort location: Cytoplasmic, score:8.96; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.587
EDM99663.1
Sigma-70 region 2; KEGG: reh:H16_A2563 2.4e-27 rpoE1; DNA-directed RNA polymerase sigma subunit (RpoE,sigma24) K00960; COG: COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Psort location: Cytoplasmic, score:8.96; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.551
EDN01412.1
Sigma-70, region 4; KEGG: btl:BALH_3229 6.9e-14 sigW; RNA polymerase sigma-70 factor, ECF subfamily K00960; COG: COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Psort location: Cytoplasmic, score:8.96.
  
     0.513
EDN00539.1
Hypothetical protein; KEGG: tbd:Tbd_2668 9.5e-11 phosphoribosylaminoimidazole-succinocarboxamide (SAICAR) synthetase K01923; COG: COG0628 Predicted permease; Psort location: CytoplasmicMembrane, score:10.00.
       0.499
EDN00535.1
Oxidoreductase, short chain dehydrogenase/reductase family protein; KEGG: pha:PSHAa2145 5.2e-32 hsdA; 3 alpha-hydroxysteroid dehydrogenase/carbonyl reductase K00037; COG: COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Psort location: Cytoplasmic, score:9.26.
       0.413
EDN00133.1
KEGG: cpf:CPF_1991 1.6e-94 protein kinase K08884; COG: COG2815 Uncharacterized protein conserved in bacteria; Psort location: CytoplasmicMembrane, score:9.82.
    
 
 0.413
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.405
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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