STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDN00791.1BMC domain protein; KEGG: chu:CHU_2402 0.00047 sucD; succinate--CoA ligase, ADP-forming (succinyl-CoA synthetase, alpha subunit) K01902; COG: COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein. (95 aa)    
Predicted Functional Partners:
EDN00784.1
Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; COG: COG4576 Carbon dioxide concentrating mechanism/carboxysome shell protein.
 
 
 
 0.957
EDN02050.1
Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; COG: COG4576 Carbon dioxide concentrating mechanism/carboxysome shell protein.
 
 
 
 0.952
EDN00790.1
Hypothetical protein.
       0.773
EDN00792.1
BMC domain protein; COG: COG4816 Ethanolamine utilization protein.
  
  
 0.686
eutC-3
KEGG: ctc:CTC02175 3.5e-81 ethanolamine ammonia-lyase light chain K03736; COG: COG4302 Ethanolamine ammonia-lyase, small subunit; Psort location: Cytoplasmic, score:8.96; Belongs to the EutC family.
  
  
 0.596
eutB-3
KEGG: lwe:lwe1133 1.5e-130 eutB; ethanolamine ammonia lyase large subunit K01748; COG: COG4303 Ethanolamine ammonia-lyase, large subunit; Psort location: Cytoplasmic, score:8.96.
     
 0.553
EDN00795.1
Hypothetical protein.
       0.499
EDN00797.1
Response regulator receiver domain protein; KEGG: rru:Rru_A1385 1.5e-18 two component, sigma54 specific, transcriptional regulator, fis family; COG: COG3707 Response regulator with putative antiterminator output domain; Psort location: Cytoplasmic, score:9.97.
       0.453
EDN00796.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: fnu:FN0077 1.1e-45 ethanolamine two-component sensor kinase; COG: COG3920 Signal transduction histidine kinase.
       0.449
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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