STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdsA3-deoxy-8-phosphooctulonate synthase; KEGG: fnu:FN1224 1.2e-87 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) K01627; COG: COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase; Psort location: Cytoplasmic, score:8.96; Belongs to the KdsA family. (258 aa)    
Predicted Functional Partners:
EDN00828.1
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: rso:RSc0412 3.1e-34 RS03380; putative 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270; COG: COG1778 Low specificity phosphatase (HAD superfamily); Psort location: Cytoplasmic, score:8.96.
  
 0.997
EDN00829.1
Sugar isomerase, KpsF/GutQ family; KEGG: hch:HCH_05315 7.8e-77 predicted sugar phosphate isomerase involved in capsule formation K06041; COG: COG0794 Predicted sugar phosphate isomerase involved in capsule formation; Psort location: Cytoplasmic, score:8.96; Belongs to the SIS family. GutQ/KpsF subfamily.
 
 
 0.997
EDN00831.1
KEGG: mgm:Mmc1_2117 4.9e-36 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979; COG: COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase.
 
  
 0.980
EDN00833.1
Glycosyltransferase, group 2 family protein; KEGG: fth:FTH_1387 2.4e-34 glycosyltransferase K00754; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
    0.775
EDN00827.1
Polysaccharide deacetylase; KEGG: ctc:CTC02298 5.7e-26 chitooligosaccharide deacetylase K01463; COG: COG0726 Predicted xylanase/chitin deacetylase; Psort location: Cytoplasmic, score:9.97.
       0.773
EDN00832.1
Hypothetical protein; KEGG: lsl:LSL_0695 1.1e-47 rfaG; glycosyltransferase K00754; COG: COG3774 Mannosyltransferase OCH1 and related enzymes; Psort location: Cytoplasmic, score:8.96.
       0.773
EDM98987.1
Prephenate dehydratase; KEGG: sth:STH2692 1.0e-51 chorismate mutase/prephenate dehydratase K04518; COG: COG0077 Prephenate dehydratase; Psort location: Cytoplasmic, score:9.97.
 
  
 0.756
EDN00834.1
Hypothetical protein; KEGG: spr:spr1223 0.00012 cps23FU; galactosyl transferase paralog K00745; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis; Psort location: Cytoplasmic, score:8.96.
  
    0.673
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
  
 
 0.641
aroK-2
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
 
  
 0.631
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.