STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDN00300.1Putative dihydroxyacetone kinase regulator; COG: COG1309 Transcriptional regulator. (186 aa)    
Predicted Functional Partners:
EDN00299.1
Hypothetical protein; COG: COG4716 Myosin-crossreactive antigen.
 
     0.840
EDM97719.1
Hypothetical protein; COG: COG4716 Myosin-crossreactive antigen.
 
     0.737
EDN01288.1
Transcriptional regulator, TetR family; COG: COG1309 Transcriptional regulator.
  
     0.541
EDN00301.1
Hypothetical protein.
       0.538
EDN00302.1
Hypothetical protein; KEGG: tko:TK2248 0.0082 biotin synthase-related protein, radical SAM superfamily K01012; COG: NOG04031 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
       0.538
EDN00303.1
COG: COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters; Psort location: CytoplasmicMembrane, score:10.00.
       0.503
EDN00304.1
KEGG: nwi:Nwi_0292 6.7e-32 ABC transporter, ATPase subunit K02031:K02032; COG: COG1122 ABC-type cobalt transport system, ATPase component; Psort location: CytoplasmicMembrane, score:7.88.
       0.503
EDN00305.1
COG: COG4721 Predicted membrane protein; Psort location: CytoplasmicMembrane, score:9.46.
       0.503
EDN00307.1
Hypothetical protein; COG: NOG18766 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
       0.446
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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