STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDN00411.1Transcriptional regulator, AraC family; KEGG: bce:BC3740 1.9e-08 ADA regulatory protein K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins. (334 aa)    
Predicted Functional Partners:
EDN00410.1
KEGG: rru:Rru_A1450 9.8e-09 transcriptional regulator, ArsR family; COG: COG0640 Predicted transcriptional regulators.
    0.972
nifJ
KEGG: ctc:CTC01741 0. pyruvate-flavodoxin oxidoreductase K03737; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit.
     
 0.833
EDN00671.1
KEGG: bcz:BCZK3497 1.3e-13 adaA; transcriptional regulator, AraC family K00567; COG: COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain; Psort location: Cytoplasmic, score:9.97.
 
 
 0.825
gltA
KEGG: gka:GK1431 0. glutamate synthaselarge subunit K00265; COG: COG0069 Glutamate synthase domain 2; Psort location: Cytoplasmic, score:8.96.
    
  0.789
EDN01206.1
Transcriptional regulator, AraC family; KEGG: bca:BCE_3772 5.6e-16 adaA; Ada regulatory protein/6-O-methylguanine-DNA methyltransferase K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins; Psort location: Cytoplasmic, score:8.96.
  
 
   0.761
EDN00408.1
Hypothetical protein; KEGG: hit:NTHI1634 2.2e-08 NAD-dependent deacetylase sirtuin 5 K01463; COG: COG0846 NAD-dependent protein deacetylases, SIR2 family.
  
    0.552
EDN00409.1
CGGC domain protein; COG: COG5561 Predicted metal-binding protein.
       0.524
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.521
EDN00407.1
Hypothetical protein; KEGG: hit:NTHI1634 3.6e-12 NAD-dependent deacetylase sirtuin 5 K01463; COG: COG0846 NAD-dependent protein deacetylases, SIR2 family.
  
    0.441
EDN00711.1
Oxidoreductase NAD-binding domain protein; KEGG: reh:H16_B1359 9.0e-28 paaE2; phenylacetic acid degradation protein E,flavodoxin reductase; COG: COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Psort location: Cytoplasmic, score:8.96.
  
   
 0.439
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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