STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDN00429.1Cna protein B-type domain protein; COG: COG4932 Predicted outer membrane protein. (2025 aa)    
Predicted Functional Partners:
EDN00427.1
COG: COG3764 Sortase (surface protein transpeptidase).
 
  
 0.908
EDM98263.1
COG: COG3764 Sortase (surface protein transpeptidase).
 
  
 0.831
EDM98508.1
COG: COG3764 Sortase (surface protein transpeptidase).
 
  
 0.829
EDM98355.1
Hypothetical protein; KEGG: eci:UTI89_C1627 8.7e-09 entS; EntS/YbdA MFS transporter; COG: NOG20194 non supervised orthologous group.
  
  
  0.804
EDM99022.1
Sigma-70 region 2; KEGG: reh:H16_A2563 8.2e-05 rpoE1; DNA-directed RNA polymerase sigma subunit (RpoE,sigma24) K00960; COG: NOG29937 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.756
EDN00718.1
Hypothetical protein; COG: NOG04780 non supervised orthologous group.
  
     0.738
EDN01943.1
LysM domain protein; KEGG: oih:OB0220 4.1e-06 N-acetylmuramoyl-L-alanine amidase (autolysine) K01448; COG: COG3409 Putative peptidoglycan-binding domain-containing protein.
  
   
 0.733
EDN00724.1
KEGG: bur:Bcep18194_C7173 1.0e-10 two component transcriptional regulator, AraC family; COG: COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain; Psort location: Cytoplasmic, score:9.97.
  
     0.730
EDM98188.1
PPIC-type PPIASE domain protein; KEGG: aeh:Mlg_0200 1.9e-09 PpiC-type peptidyl-prolyl cis-trans isomerase K03771; COG: COG0760 Parvulin-like peptidyl-prolyl isomerase.
  
     0.638
EDM99647.1
DNA-binding helix-turn-helix protein; COG: COG1396 Predicted transcriptional regulators.
  
     0.599
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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