Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDN00439.1Hypothetical protein; COG: NOG18822 non supervised orthologous group. (320 aa)    
Predicted Functional Partners:
EDN00441.1
AIG2-like family protein; COG: NOG17855 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
 
    0.950
EDN00448.1
Hypothetical protein; COG: NOG16905 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
 
     0.873
EDN00661.1
Putative selenate reductase, YgfK subunit; KEGG: eci:UTI89_C3263 3.0e-210 ygfK; hypothetical protein YgfK K05299; COG: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases; Psort location: Cytoplasmic, score:9.97.
  
 
 0.825
dcm
KEGG: sag:SAG1869 4.1e-56 prophage LambdaSa2, type II DNA modification methyltransferase, putative K00558; COG: COG0270 Site-specific DNA methylase; Psort location: Cytoplasmic, score:8.96.
 
     0.810
EDN00436.1
Hypothetical protein.
 
     0.807
EDM98274.1
AIG2-like family protein; COG: NOG17855 non supervised orthologous group.
 
     0.775
EDN00440.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.96.
       0.773
EDN00714.1
4Fe-4S binding domain protein; KEGG: cch:Cag_0580 4.0e-78 glutamate synthase (NADPH) small chain K00264; COG: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases; Psort location: Cytoplasmic, score:9.97.
  
 
  0.766
EDM98279.1
Hypothetical protein; COG: NOG14267 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
  
     0.759
EDN01569.1
N-acetylmuramoyl-L-alanine amidase; KEGG: rpc:RPC_2185 7.0e-06 negative regulator of AmpC, AmpD K01446; COG: COG5632 N-acetylmuramoyl-L-alanine amidase; Psort location: Cytoplasmic, score:8.96.
  
    0.746
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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