STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDN00461.1Hypothetical protein; KEGG: spj:MGAS2096_Spy1129 1.0e-28 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A K01957; Psort location: CytoplasmicMembrane, score:9.50. (108 aa)    
Predicted Functional Partners:
EDN00460.1
TraG/TraD family protein; COG: COG3505 Type IV secretory pathway, VirD4 components.
 
     0.891
EDN00467.1
Hypothetical protein.
 
     0.786
EDN00458.1
Hypothetical protein; COG: KOG3544 Collagens (type IV and type XIII), and related proteins.
 
     0.783
EDM98366.1
Hypothetical protein.
 
     0.782
EDN00464.1
Hypothetical protein; COG: NOG28113 non supervised orthologous group; Psort location: CytoplasmicMembrane, score:10.00.
 
     0.781
EDM98364.1
Hypothetical protein; COG: NOG28113 non supervised orthologous group; Psort location: CytoplasmicMembrane, score:10.00.
 
     0.781
EDN00468.1
Hypothetical protein; COG: COG3451 Type IV secretory pathway, VirB4 components; Psort location: Cytoplasmic, score:8.96.
 
     0.766
EDM98367.1
Hypothetical protein; COG: COG3451 Type IV secretory pathway, VirB4 components; Psort location: Cytoplasmic, score:8.96.
 
     0.765
EDN00469.1
NlpC/P60 family protein; KEGG: bpm:BURPS1710b_A1202 8.2e-07 serine/threonine protein kinase K00870; COG: COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).
  
     0.764
EDM98368.1
Hypothetical protein; KEGG: azo:azo0200 3.5e-06 sbcC; exonuclease SbcC, putative K01146; COG: COG0791 Cell wall-associated hydrolases (invasion-associated proteins).
  
     0.739
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.