STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDN00056.1Hypothetical protein; COG: NOG14453 non supervised orthologous group. (493 aa)    
Predicted Functional Partners:
EDN00057.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.96.
       0.757
EDN00058.1
Hypothetical protein; KEGG: vpa:VPA0006 4.1e-06 GTP cyclohydrolase II K01497; COG: COG3236 Uncharacterized protein conserved in bacteria.
       0.757
EDN00059.1
Oxidoreductase; COG: NOG16874 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
       0.756
EDN00060.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.96.
       0.749
EDN00055.1
Hypothetical protein.
       0.717
EDN00061.1
Hypothetical protein; COG: NOG34368 non supervised orthologous group.
       0.714
EDN00062.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.96.
       0.712
EDN00064.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.96.
       0.700
EDN00063.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.96.
       0.697
kptA-2
RNA 2'-phosphotransferase, Tpt1/KptA family; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase.
       0.697
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.