STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDN00087.1Putative TIGR00252 family protein; KEGG: sat:SYN_00772 1.4e-13 endonuclease; COG: COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase; Psort location: Cytoplasmic, score:8.96; Belongs to the UPF0102 family. (119 aa)    
Predicted Functional Partners:
EDN00088.1
Renal dipeptidase family protein; KEGG: ctc:CTC00571 3.0e-45 membrane dipeptidase K01273; COG: COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog; Psort location: Cytoplasmic, score:8.96.
       0.821
thrC-2
Threonine synthase; KEGG: swo:Swol_1302 3.3e-133 threonine synthase K01733; COG: COG0498 Threonine synthase.
       0.821
EDN01443.1
Mg chelatase-like protein; KEGG: chu:CHU_0354 5.4e-124 ch1I; magnesium chelatase, subunit ChlI K07391; COG: COG0606 Predicted ATPase with chaperone activity; Psort location: Cytoplasmic, score:8.96.
 
  
 0.781
EDN00090.1
Ser/Thr phosphatase family protein; KEGG: cno:NT01CX_1367 1.4e-45 predicted phoshohydrolase; COG: COG1768 Predicted phosphohydrolase.
       0.763
ylqF
Ribosome biogenesis GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.
       0.731
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.731
dprA
DNA protecting protein DprA; COG: COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake; Psort location: Cytoplasmic, score:8.96.
 
    0.688
EDM98727.1
comF family protein; KEGG: chu:CHU_3495 4.9e-20 purF; amidophosphoribosyltransferase K00764; COG: COG1040 Predicted amidophosphoribosyltransferases; Psort location: Cytoplasmic, score:8.96.
 
    0.642
tig
Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.
       0.562
yeaZ
Universal bacterial protein YeaZ; KEGG: ctc:CTC02444 8.7e-30 O-sialoglycoprotein endopeptidase K01409; COG: COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone.
 
     0.543
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.