STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDN00155.1Hypothetical protein; COG: NOG16870 non supervised orthologous group. (176 aa)    
Predicted Functional Partners:
fba
Fructose-1,6-bisphosphate aldolase, class II; KEGG: bfr:BF3299 1.3e-106 fructose-bisphosphate aldolase K01624; COG: COG0191 Fructose/tagatose bisphosphate aldolase; Psort location: Cytoplasmic, score:8.96.
       0.540
EDN00169.1
LysM domain protein; COG: COG1388 FOG: LysM repeat; Psort location: Cytoplasmic, score:8.96.
  
     0.532
EDN01991.1
COG: COG0629 Single-stranded DNA-binding protein.
  
     0.494
EDM99026.1
Hypothetical protein.
  
     0.478
EDN01323.1
O-antigen polymerase; KEGG: sec:SC3636 2.9e-05 waaL; hypothetical protein K02847; COG: COG3307 Lipid A core - O-antigen ligase and related enzymes; Psort location: CytoplasmicMembrane, score:10.00.
  
     0.477
EDM98030.1
Hypothetical protein; COG: NOG13733 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
  
     0.469
EDN00276.1
sigma-E processing peptidase SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
     0.464
EDM98191.1
Hypothetical protein; COG: COG0730 Predicted permeases; Psort location: CytoplasmicMembrane, score:9.46.
  
     0.454
spoIIR
Stage II sporulation protein R; COG: NOG13215 non supervised orthologous group.
  
     0.441
EDN01160.1
Putative stage II sporulation protein E; KEGG: tte:TTE2396 2.7e-58 rsbU; serine phosphatase RsbU, regulator of sigma subunit K06382; COG: COG2208 Serine phosphatase RsbU, regulator of sigma subunit; Psort location: CytoplasmicMembrane, score:10.00.
  
     0.416
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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