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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xseBExodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (77 aa)    
Predicted Functional Partners:
xseA
Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
 
 0.999
EDN00192.1
Polyprenyl synthetase; KEGG: sth:STH1844 2.8e-65 geranylgeranyl pyrophosphate synthase K00804; COG: COG0142 Geranylgeranyl pyrophosphate synthase; Psort location: Cytoplasmic, score:9.97; Belongs to the FPP/GGPP synthase family.
 
  
 0.905
nusB
Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
  
  
 0.860
EDN00195.1
Metallohydrolase, glycoprotease/Kae1 family; KEGG: mta:Moth_1520 9.8e-54 O-sialoglycoprotein endopeptidase K01409; COG: COG0533 Metal-dependent proteases with possible chaperone activity; Psort location: Extracellular, score:9.45.
       0.830
dxs
1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
     
 0.735
EDN00197.1
COG: COG1302 Uncharacterized protein conserved in bacteria.
       0.735
recN
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
     
 0.722
EDM99189.1
KEGG: spi:MGAS10750_Spy0821 8.1e-59 recJ; single-stranded-DNA-specific exonuclease RecJ; COG: COG0608 Single-stranded DNA-specific exonuclease.
  
  
 0.718
EDN00191.1
Divergent PAP2 family; COG: COG1963 Uncharacterized protein conserved in bacteria; Psort location: CytoplasmicMembrane, score:9.46.
       0.697
rrmJ
KEGG: cff:CFF8240_1111 1.5e-25 rrmJ; ribosomal RNA large subunit methyltransferase J K00599; COG: COG1189 Predicted rRNA methylase; Psort location: Cytoplasmic, score:8.96.
  
    0.694
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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