STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDN00261.1Hypothetical protein; COG: KOG1954 Endocytosis/signaling protein EHD1; Psort location: CytoplasmicMembrane, score:9.46. (251 aa)    
Predicted Functional Partners:
EDN00259.1
SPFH/Band 7/PHB domain protein; KEGG: reh:H16_B0196 2.4e-06 sbcC; DNA repair exonuclease, SbcC K01146; COG: COG2268 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score:8.96.
 
     0.941
EDN00262.1
Hypothetical protein; COG: NOG16855 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
       0.609
EDN00264.1
KEGG: shn:Shewana3_3435 2.3e-14 transcriptional regulator, LysR family K06022; COG: COG0583 Transcriptional regulator; Psort location: Cytoplasmic, score:8.96; Belongs to the LysR transcriptional regulatory family.
       0.489
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.