STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDN00264.1KEGG: shn:Shewana3_3435 2.3e-14 transcriptional regulator, LysR family K06022; COG: COG0583 Transcriptional regulator; Psort location: Cytoplasmic, score:8.96; Belongs to the LysR transcriptional regulatory family. (313 aa)    
Predicted Functional Partners:
EDM99413.1
LysR substrate binding domain protein; KEGG: shn:Shewana3_3435 1.7e-19 transcriptional regulator, LysR family K06022; COG: COG0583 Transcriptional regulator; Psort location: Cytoplasmic, score:9.97; Belongs to the LysR transcriptional regulatory family.
  
     0.763
EDM97435.1
LysR substrate binding domain protein; KEGG: shn:Shewana3_3435 4.4e-15 transcriptional regulator, LysR family K06022; COG: COG0583 Transcriptional regulator; Psort location: Cytoplasmic, score:9.97; Belongs to the LysR transcriptional regulatory family.
  
     0.763
EDN01472.1
LysR substrate binding domain protein; KEGG: shn:Shewana3_3435 2.8e-12 transcriptional regulator, LysR family K06022; COG: COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.754
EDN00262.1
Hypothetical protein; COG: NOG16855 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
       0.686
gltA
KEGG: gka:GK1431 0. glutamate synthaselarge subunit K00265; COG: COG0069 Glutamate synthase domain 2; Psort location: Cytoplasmic, score:8.96.
 
  
 0.576
EDN00265.1
KEGG: ctc:CTC00811 1.7e-65 fumarate reductase flavoprotein subunit precursor K00244; COG: COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; Psort location: Periplasmic, score:9.76.
  
    0.498
EDN00261.1
Hypothetical protein; COG: KOG1954 Endocytosis/signaling protein EHD1; Psort location: CytoplasmicMembrane, score:9.46.
       0.489
EDN00259.1
SPFH/Band 7/PHB domain protein; KEGG: reh:H16_B0196 2.4e-06 sbcC; DNA repair exonuclease, SbcC K01146; COG: COG2268 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score:8.96.
       0.430
EDN00671.1
KEGG: bcz:BCZK3497 1.3e-13 adaA; transcriptional regulator, AraC family K00567; COG: COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain; Psort location: Cytoplasmic, score:9.97.
 
  
 0.407
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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