STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDN00291.1Thioesterase family protein; KEGG: reh:H16_A0188 2.2e-10 predicted thioesterase K01076; COG: COG5496 Predicted thioesterase. (150 aa)    
Predicted Functional Partners:
EDN00292.1
YbaK/proline--tRNA ligase associated domain protein; KEGG: tma:TM0514 2.1e-07 prolyl-tRNA synthetase K01881; COG: COG2606 Uncharacterized conserved protein; Psort location: Cytoplasmic, score:8.96.
       0.773
EDN00293.1
Hypothetical protein; KEGG: tpa:TP0429 0.0048 V-type ATPase, subunit I (atpI-1) K02123; COG: COG3247 Uncharacterized conserved protein; Psort location: CytoplasmicMembrane, score:10.00.
       0.547
EDN00290.1
ABC transporter, solute-binding protein; COG: COG0687 Spermidine/putrescine-binding periplasmic protein; Psort location: Periplasmic, score:9.44.
       0.504
potA
Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
       0.414
EDN00288.1
KEGG: cya:CYA_1846 2.4e-15 modB; molybdate ABC transporter, permease protein K02018; COG: COG1176 ABC-type spermidine/putrescine transport system, permease component I; Psort location: CytoplasmicMembrane, score:10.00.
       0.414
EDN00289.1
ABC transporter, permease protein; KEGG: cdi:DIP0495 3.1e-12 putative molybdenum ABC transport system (integral membrane and ATP-binding proteins) K02017:K02018; COG: COG1177 ABC-type spermidine/putrescine transport system, permease component II; Psort location: CytoplasmicMembrane, score:10.00.
       0.414
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.