STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM99879.1Transcriptional regulator, TetR family; COG: COG1309 Transcriptional regulator; Psort location: Cytoplasmic, score:8.96. (209 aa)    
Predicted Functional Partners:
EDM99881.1
ABC transporter, ATP-binding protein; KEGG: rru:Rru_A2339 7.3e-81 ABC transporter component K06021; COG: COG1132 ABC-type multidrug transport system, ATPase and permease components; Psort location: CytoplasmicMembrane, score:10.00.
 
     0.805
EDM99880.1
ABC transporter, ATP-binding protein; KEGG: rru:Rru_A0881 1.2e-85 ABC transporter component K06021; COG: COG1132 ABC-type multidrug transport system, ATPase and permease components; Psort location: CytoplasmicMembrane, score:10.00.
 
     0.804
EDM99878.1
Hypothetical protein.
       0.762
EDM99876.1
ABC transporter, ATP-binding protein; KEGG: rru:Rru_A0881 3.5e-65 ABC transporter component K06021; COG: COG1132 ABC-type multidrug transport system, ATPase and permease components; Psort location: CytoplasmicMembrane, score:10.00.
 
     0.744
EDM99877.1
Transcriptional regulator, TetR family; COG: COG1309 Transcriptional regulator; Psort location: Cytoplasmic, score:8.96.
 
    
0.675
EDM99883.1
Hypothetical protein; KEGG: mav:MAV_2991 1.0e-19 tetracenomycin polyketide synthesis O-methyltransferase TcmP K00599; COG: COG3315 O-Methyltransferase involved in polyketide biosynthesis.
 
     0.634
EDM99889.1
Hypothetical protein; KEGG: fnu:FN0984 3.8e-36 tetracenomycin polyketide synthesis O-methyltransferase TcmP K00599; COG: COG3315 O-Methyltransferase involved in polyketide biosynthesis.
 
     0.520
EDM99882.1
Hypothetical protein.
       0.513
EDM99890.1
Conserved hypothetical protein TIGR02185; COG: NOG13235 non supervised orthologous group; Psort location: CytoplasmicMembrane, score:10.00.
 
     0.510
EDN00878.1
Hydrolase, alpha/beta domain protein; KEGG: msm:MSMEG_6037 4.5e-05 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase K01559; COG: COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
    0.503
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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