STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM99962.1Sel1 repeat protein; KEGG: cch:Cag_1938 4.1e-60 Sel1-like repeat; COG: COG0790 FOG: TPR repeat, SEL1 subfamily; Psort location: Extracellular, score:9.45. (1017 aa)    
Predicted Functional Partners:
EDN02064.1
ATPase, AAA family; KEGG: dme:Dmel_CG8571 1.5e-06 smid; smallminded K01509; COG: COG0790 FOG: TPR repeat, SEL1 subfamily; Psort location: Periplasmic, score:9.83.
  
 0.987
EDM99597.1
Hypothetical protein; KEGG: poy:PAM130 0.0018 hflB; ATP-dependent Zn protease K03798; Psort location: Cytoplasmic, score:8.96.
   
 0.987
gidA
tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
   
   0.746
EDM99960.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.96.
       0.615
EDM98501.1
HD domain protein; KEGG: ava:Ava_1777 1.3e-20 metal dependent phosphohydrolase, HD region with response regulator receiver modulation K07814; COG: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; Psort location: Cytoplasmic, score:8.96.
    
 0.515
fbp
KEGG: cno:NT01CX_1512 7.5e-198 fructose-1,6-bisphosphatase K01086; COG: COG3855 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score:8.96.
       0.464
EDM97931.1
Transporter, major facilitator family protein; KEGG: eci:UTI89_C3355 0.00053 nupG; transport of nucleosides, permease protein K03289; COG: COG0477 Permeases of the major facilitator superfamily; Psort location: CytoplasmicMembrane, score:10.00.
  
     0.462
EDM99963.1
HD domain protein; KEGG: ava:Ava_1777 6.1e-45 metal dependent phosphohydrolase, HD region with response regulator receiver modulation K07814; COG: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; Psort location: Cytoplasmic, score:9.97.
       0.452
EDM97743.1
Hypothetical protein; KEGG: chu:CHU_2979 1.2e-17 conserved hypothetical protein, with TPR repeat; COG: COG4995 Uncharacterized protein conserved in bacteria; Psort location: CytoplasmicMembrane, score:9.27.
   
 
 0.446
EDM99964.1
Hypothetical protein; KEGG: cvi:CV0882 2.3e-07 probable sensor/response regulator hybrid protein; COG: COG0642 Signal transduction histidine kinase.
       0.443
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.