STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM99649.1Copper amine oxidase domain protein. (275 aa)    
Predicted Functional Partners:
EDM99648.1
Hypothetical protein.
       0.773
EDM99650.1
Sigma-70 region 2; KEGG: btl:BALH_3229 3.9e-11 sigW; RNA polymerase sigma-70 factor, ECF subfamily K00960; COG: COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Psort location: Cytoplasmic, score:8.96.
       0.675
EDM99651.1
Hypothetical protein.
      
0.675
EDM97720.1
Hypothetical protein; KEGG: bcz:BCZK1628 6.1e-12 amiB; S-layer protein and N-acetylmuramoyl-L-alanine amidase fusion protein K01448; COG: NOG16349 non supervised orthologous group; Psort location: Extracellular, score:9.65.
  
     0.646
EDM98355.1
Hypothetical protein; KEGG: eci:UTI89_C1627 8.7e-09 entS; EntS/YbdA MFS transporter; COG: NOG20194 non supervised orthologous group.
  
     0.610
EDN00998.1
Hypothetical protein; KEGG: bcz:BCZK0976 7.6e-14 S-layer homology and secreted protein with 1 GW repeat fusion protein K01463; COG: NOG09437 non supervised orthologous group.
  
     0.583
EDM99647.1
DNA-binding helix-turn-helix protein; COG: COG1396 Predicted transcriptional regulators.
       0.543
EDM98904.1
Hypothetical protein; KEGG: bcz:BCZK1628 7.2e-14 amiB; S-layer protein and N-acetylmuramoyl-L-alanine amidase fusion protein K01448; COG: NOG20194 non supervised orthologous group.
  
     0.517
EDN00761.1
Hypothetical protein; KEGG: btk:BT9727_2310 0.0014 N-acetylmuramoyl-L-alanine amidase, family 3 K01448; COG: NOG09437 non supervised orthologous group.
  
     0.497
sap
S-layer protein Sap; KEGG: bcz:BCZK1628 2.1e-10 amiB; S-layer protein and N-acetylmuramoyl-L-alanine amidase fusion protein K01448; COG: NOG33931 non supervised orthologous group.
  
     0.479
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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