STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yedFSelenium metabolism protein YedF; COG: NOG13230 non supervised orthologous group; Belongs to the sulfur carrier protein TusA family. (207 aa)    
Predicted Functional Partners:
EDM99721.1
Hypothetical protein.
 
     0.930
nifS
Cysteine desulfurase NifS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.
   
 0.927
EDM99398.1
Aminotransferase, class V; KEGG: mta:Moth_0199 9.1e-83 aminotransferase, class V K04487; COG: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.
   
 0.927
EDM99720.1
KEGG: chy:CHY_0011 3.0e-84 cysteine desulfurase family protein K01763; COG: COG0520 Selenocysteine lyase; Psort location: Cytoplasmic, score:8.96.
 
 
 
 0.924
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
 
   
 0.865
EDM99724.1
2-hydroxyglutaryl-CoA dehydratase, D-component; KEGG: eci:UTI89_C5045 1.2e-98 yjiM; hypothetical protein YjiM K04111; COG: COG1775 Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB; Psort location: Cytoplasmic, score:8.96.
 
    0.838
EDM99723.1
Putative CoA-substrate-specific enzyme activase; KEGG: eci:UTI89_C5044 6.1e-45 yjiL; hypothetical protein YjiL K04111; COG: COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain).
 
     0.746
yqeC
Putative selenium-dependent hydroxylase accessory protein YqeC; COG: NOG13189 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
 
   
 0.714
selB
KEGG: dde:Dde_3173 1.2e-105 selenocysteine-specific translation elongation factor K03833; COG: COG3276 Selenocysteine-specific translation elongation factor; Psort location: CytoplasmicMembrane, score:10.00.
 
   
 0.713
EDM97432.1
Hypothetical protein; COG: COG2391 Predicted transporter component; Psort location: CytoplasmicMembrane, score:10.00.
 
  
 0.704
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.