STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM99740.1DNA-binding helix-turn-helix protein; COG: COG3655 Predicted transcriptional regulator. (72 aa)    
Predicted Functional Partners:
EDM99067.1
Hypothetical protein; COG: COG3655 Predicted transcriptional regulator.
  
     0.775
EDM99741.1
Hypothetical protein; KEGG: spr:spr1102 1.6e-55 spnII-interrupted-N; uncharacterized restriction enzyme, interrupted-N K01155; COG: NOG23403 non supervised orthologous group.
       0.762
EDM99742.1
Eco57I restriction endonuclease; KEGG: spr:spr1101 5.6e-80 spnII-interrupted-C; uncharacterized restriction enzyme, interrupted-C K01155; COG: NOG08648 non supervised orthologous group.
       0.762
EDM99743.1
Hypothetical protein; COG: NOG23023 non supervised orthologous group.
       0.708
EDM98995.1
Hypothetical protein; COG: COG3655 Predicted transcriptional regulator; Psort location: Cytoplasmic, score:8.96.
  
     0.694
EDM99744.1
Hypothetical protein; COG: COG5022 Myosin heavy chain.
       0.666
EDM99738.1
Hypothetical protein.
       0.475
EDM99737.1
Hypothetical protein; COG: COG3505 Type IV secretory pathway, VirD4 components; Psort location: Cytoplasmic, score:8.96.
       0.473
EDM99739.1
Hypothetical protein; KEGG: mmp:MMP0380 0.0025 dnaB; DNA polymerase family B K02319; Psort location: Cytoplasmic, score:8.96.
       0.473
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.