STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM99489.1Iron dependent repressor DNA binding domain protein; COG: COG1321 Mn-dependent transcriptional regulator; Psort location: Cytoplasmic, score:8.96. (123 aa)    
Predicted Functional Partners:
EDM99490.1
Putative phage tail component domain protein; KEGG: rru:Rru_A0863 7.5e-72 ABC transporter, transmembrane region K06020; COG: COG1132 ABC-type multidrug transport system, ATPase and permease components; Psort location: CytoplasmicMembrane, score:10.00.
       0.762
EDM99491.1
ABC transporter, ATP-binding protein; KEGG: rru:Rru_A0881 2.5e-80 ABC transporter component K06021; COG: COG1132 ABC-type multidrug transport system, ATPase and permease components; Psort location: CytoplasmicMembrane, score:10.00.
       0.746
EDM99492.1
KEGG: sth:STH2621 2.3e-29 amino acid ABC transporter ATP-binding protein K02028; COG: COG1122 ABC-type cobalt transport system, ATPase component; Psort location: CytoplasmicMembrane, score:7.88.
       0.662
EDM99494.1
Conserved hypothetical protein TIGR02185; COG: NOG13235 non supervised orthologous group; Psort location: CytoplasmicMembrane, score:10.00.
  
    0.425
metN
ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
    
   0.424
EDM99493.1
COG: COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters; Psort location: CytoplasmicMembrane, score:9.82.
       0.418
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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