STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM99498.1Hypothetical protein. (167 aa)    
Predicted Functional Partners:
EDM99133.1
Hypothetical protein; COG: NOG34358 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
 
     0.808
EDM97468.1
Hypothetical protein.
  
     0.762
EDM99132.1
Hypothetical protein; KEGG lac:LBA1588 0.00018 prtM; PrtM precursor K07533.
 
     0.607
EDM99499.1
Hypothetical protein; KEGG: rru:Rru_A0882 3.5e-17 ABC transporter, transmembrane region K06021; COG: COG1132 ABC-type multidrug transport system, ATPase and permease components; Psort location: CytoplasmicMembrane, score:9.82.
       0.556
EDM97469.1
Hypothetical protein; COG: COG3505 Type IV secretory pathway, VirD4 components.
  
     0.555
EDM99470.1
Hypothetical protein; COG: NOG36404 non supervised orthologous group.
  
     0.539
EDM99731.1
Hypothetical protein.
  
     0.537
EDM99500.1
KEGG: rru:Rru_A0863 9.4e-81 ABC transporter, transmembrane region K06020; COG: COG1132 ABC-type multidrug transport system, ATPase and permease components; Psort location: CytoplasmicMembrane, score:10.00.
       0.525
EDM97871.1
Hypothetical protein; COG: NOG21981 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
  
     0.513
EDM99934.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.96.
  
     0.506
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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