STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM99514.1Putative nickel ABC transporter, periplasmic nickel-binding protein; KEGG: shn:Shewana3_2650 5.9e-28 acetate kinase K00925; COG: COG0747 ABC-type dipeptide transport system, periplasmic component; Psort location: Periplasmic, score:9.76. (538 aa)    
Predicted Functional Partners:
EDM99510.1
KEGG: rha:RHA1_ro09047 2.0e-32 ABC peptide transporter, permease component K02033; COG: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Psort location: CytoplasmicMembrane, score:10.00.
 0.977
EDM99511.1
ABC transporter, permease protein; KEGG: baa:BA_0884 3.6e-05 binding-protein-dependent transport systems inner membrane component K00294; COG: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Psort location: CytoplasmicMembrane, score:10.00.
 0.976
EDM98454.1
KEGG: rha:RHA1_ro09047 7.3e-42 ABC peptide transporter, permease component K02033; COG: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Psort location: CytoplasmicMembrane, score:10.00.
 0.958
EDN01640.1
ABC transporter, permease protein; KEGG: mmu:235439 5.2e-10 Herc1; hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1 K03874; COG: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Psort location: CytoplasmicMembrane, score:10.00.
 0.947
EDM99512.1
ABC transporter, ATP-binding protein; KEGG: fal:FRAAL4836 2.5e-39 oppD; oligopeptide transport protein of the ABC superfamily, ATP-binding component; COG: COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase.
 
 0.947
EDM99513.1
ABC transporter, ATP-binding protein; KEGG: rru:Rru_A2011 9.8e-33 ABC transporter component K06020:K06021; COG: COG1124 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Psort location: Cytoplasmic, score:9.12.
 
 
 0.941
EDN01639.1
ABC transporter, permease protein; KEGG: syf:Synpcc7942_2454 9.4e-49 adenine phosphoribosyltransferase K00759; COG: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Psort location: CytoplasmicMembrane, score:10.00.
 0.930
EDM98608.1
KEGG: rha:RHA1_ro09047 4.9e-36 ABC peptide transporter, permease component K02033; COG: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Psort location: CytoplasmicMembrane, score:10.00.
 0.930
EDM98607.1
ABC transporter, permease protein; COG: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Psort location: CytoplasmicMembrane, score:10.00.
 0.919
EDM98456.1
ABC transporter, permease protein; KEGG: bpm:BURPS1710b_A0449 1.8e-05 glycine betaine/L-proline ABC transporter, permease protein K02001; COG: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Psort location: CytoplasmicMembrane, score:10.00.
 0.918
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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