STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM99581.1Hypothetical protein; COG: COG0727 Predicted Fe-S-cluster oxidoreductase; Psort location: Cytoplasmic, score:8.96. (267 aa)    
Predicted Functional Partners:
EDM99582.1
Hypothetical protein.
       0.773
EDM99591.1
Hypothetical protein; KEGG: sab:SAB1265c 2.0e-08 probable nitric oxide reductase protein K00377; COG: COG4548 Nitric oxide reductase activation protein; Psort location: Cytoplasmic, score:8.96.
  
  
 0.713
EDM99592.1
Von Willebrand factor type A domain protein; KEGG: rru:Rru_A0207 8.1e-08 cobalt chelatase, CobT subunit; COG: COG4548 Nitric oxide reductase activation protein.
  
     0.687
ligA-2
DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
 
     0.608
EDM97534.1
Hypothetical protein; KEGG: ngo:NGO0998 2.6e-06 putative DNA primase K02316; COG: COG0358 DNA primase (bacterial type).
 
     0.570
EDM97539.1
YqaJ viral recombinase family protein; COG: COG5377 Phage-related protein, predicted endonuclease.
  
     0.558
EDM99583.1
Hypothetical protein.
       0.554
EDM99579.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.96.
       0.521
EDM99584.1
Hypothetical protein.
       0.439
EDM98496.1
S1 RNA binding domain protein; KEGG: nph:NP1094A 3.8e-07 chlID, chlD; magnesium chelatase (protoporphyrin IX magnesium-chelatase), fused subunits ChlI/ChlD K03404:K03405; COG: COG0539 Ribosomal protein S1; Psort location: Cytoplasmic, score:8.96.
  
    0.438
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.