STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoVACStage V sporulation protein AC; COG: NOG09745 non supervised orthologous group; Psort location: CytoplasmicMembrane, score:9.46. (147 aa)    
Predicted Functional Partners:
spoVAD
Stage V sporulation protein AD; COG: NOG06312 non supervised orthologous group.
 
  
 0.960
spoVAE
Stage V sporulation protein AE; COG: NOG13202 non supervised orthologous group; Psort location: CytoplasmicMembrane, score:9.46.
 
  
 0.896
gpr
GPR endopeptidase; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.860
spoIIAB
Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
 
   
 0.852
spoIVA
Stage IV sporulation protein A; COG: NOG05962 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
  
   
 0.815
EDN01657.1
Hypothetical protein; COG: NOG05957 non supervised orthologous group; Psort location: CytoplasmicMembrane, score:10.00.
  
  
 0.802
EDM98121.1
Sporulation protein, YlmC/YmxH family; COG: COG1873 Uncharacterized conserved protein; Psort location: Cytoplasmic, score:8.96.
  
    0.795
spoIIR
Stage II sporulation protein R; COG: NOG13215 non supervised orthologous group.
  
   
 0.789
EDN01201.1
Small, acid-soluble spore protein, alpha/beta type; COG: NOG16862 non supervised orthologous group.
  
  
 0.778
spoIVB
SpoIVB peptidase; KEGG: btl:BALH_3781 1.6e-62 spoIVB; stage IV sporulation protein B; COG: COG0750 Predicted membrane-associated Zn-dependent proteases 1.
  
     0.775
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.