STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM98502.1Helicase associated domain protein; KEGG: fth:FTH_0160 1.1e-08 DNA/RNA helicase K01529; COG: COG4889 Predicted helicase; Psort location: Cytoplasmic, score:8.96. (654 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.941
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
  0.940
rpoB
KEGG: tte:TTE2301 1.3e-63 rpoB; DNA-directed RNA polymerase beta subunit/140 kD subunit (split gene in Mjan, Mthe, Aful) K03043; COG: COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit; Psort location: Cytoplasmic, score:9.97.
   
  0.857
rpoB-2
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.857
EDM99077.1
Hypothetical protein; KEGG: lil:LA1875 1.8e-54 ATP-dependent DNA helicase K03722; COG: COG1199 Rad3-related DNA helicases; Psort location: Cytoplasmic, score:8.96.
  
 0.851
EDN00512.1
Hypothetical protein; KEGG: tbd:Tbd_0997 2.0e-48 helicase C2 K03722; COG: COG1199 Rad3-related DNA helicases; Psort location: Cytoplasmic, score:8.96.
   
 0.811
EDM98385.1
Hypothetical protein; KEGG: aeh:Mlg_1156 9.4e-49 helicase C2 K03722; COG: COG1199 Rad3-related DNA helicases; Psort location: Cytoplasmic, score:8.96.
   
 0.811
EDM98499.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.96.
       0.773
EDM98500.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.96.
       0.773
EDM98501.1
HD domain protein; KEGG: ava:Ava_1777 1.3e-20 metal dependent phosphohydrolase, HD region with response regulator receiver modulation K07814; COG: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; Psort location: Cytoplasmic, score:8.96.
       0.773
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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