STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM98610.1COG: COG4474 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score:8.96. (192 aa)    
Predicted Functional Partners:
EDM98287.1
COG: COG4474 Uncharacterized protein conserved in bacteria.
  
     0.756
EDM98541.1
Peptidase, A24 family; KEGG: oih:OB0617 7.9e-13 leader peptidase (prepilin peptidase) / N-methyltransferase K02236; COG: COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases; Psort location: CytoplasmicMembrane, score:9.46.
  
     0.679
EDM98611.1
DNA-binding helix-turn-helix protein; COG: NOG36343 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
 
     0.619
EDN00307.1
Hypothetical protein; COG: NOG18766 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
  
     0.557
EDM98609.1
Transcriptional regulator, AraC family; KEGG: bli:BL05281 1.0e-07 adaA; methylphosphotriester-DNA alkyltransferase and transcriptional regulator (AraC/XylS family) K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins.
       0.553
EDM98534.1
Hypothetical protein; COG: NOG17676 non supervised orthologous group.
  
     0.494
EDM98544.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.96.
  
     0.448
EDN00878.1
Hydrolase, alpha/beta domain protein; KEGG: msm:MSMEG_6037 4.5e-05 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase K01559; COG: COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
     0.436
EDM98563.1
Hypothetical protein; COG: COG0727 Predicted Fe-S-cluster oxidoreductase.
  
     0.419
EDM97628.1
Site-specific recombinase, phage integrase family; COG: COG0582 Integrase; Belongs to the 'phage' integrase family.
  
     0.410
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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