STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM98645.1Hypothetical protein; KEGG: mmu:75590 0.00044 Dusp9; dual specificity phosphatase 9 K04459; COG: COG0419 ATPase involved in DNA repair; Psort location: Cytoplasmic, score:8.96. (352 aa)    
Predicted Functional Partners:
EDM98646.1
Hypothetical protein.
       0.773
EDM98647.1
Hypothetical protein; COG: COG0358 DNA primase (bacterial type); Psort location: Cytoplasmic, score:8.96.
       0.768
EDM98644.1
Hypothetical protein; COG: COG5164 Transcription elongation factor; Psort location: Cytoplasmic, score:8.96.
       0.762
EDM98643.1
Hypothetical protein; COG: NOG23366 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
       0.741
EDM98648.1
Hypothetical protein; KEGG: sil:SPO1893 1.1e-05 ribonuclease, Rne/Rng family; COG: NOG35984 non supervised orthologous group; Psort location: Periplasmic, score:9.83.
       0.649
EDM98642.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.96.
       0.561
recD2
Helicase, RecD/TraA family; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.
       0.491
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.