STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM98706.1KEGG: reh:H16_A1397 3.3e-69 ABC-type transporter, ATPase component; COG: COG1101 ABC-type uncharacterized transport system, ATPase component; Psort location: CytoplasmicMembrane, score:8.02. (266 aa)    
Predicted Functional Partners:
EDM98707.1
Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_4171 7.1e-07 ribose transport system permease protein RbsC; COG: COG4120 ABC-type uncharacterized transport system, permease component; Psort location: CytoplasmicMembrane, score:10.00.
    0.978
EDM98708.1
ABC transporter substrate binding protein; KEGG: msm:MSMEG_6020 0.00048 D-xylose-binding periplasmic protein; COG: COG2984 ABC-type uncharacterized transport system, periplasmic component.
 
    0.930
EDN01306.1
Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_3090 1.4e-12 ribose transport system permease protein RbsC; COG: COG4120 ABC-type uncharacterized transport system, permease component; Psort location: CytoplasmicMembrane, score:10.00.
    0.920
EDN01305.1
ABC transporter substrate binding protein; COG: COG2984 ABC-type uncharacterized transport system, periplasmic component.
 
    0.811
EDM98709.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.96.
       0.642
EDN01450.1
ABC transporter, ATP-binding protein; KEGG: pen:PSEEN1283 1.3e-58 livG; branched-chain amino acid ABC transporter, ATP-binding protein; COG: COG0411 ABC-type branched-chain amino acid transport systems, ATPase component; Psort location: CytoplasmicMembrane, score:7.88.
 
 
   
0.452
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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