STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM98720.1KEGG: tte:TTE1818 0. dnaE; DNA polymerase III alpha subunit K02337; COG: COG0587 DNA polymerase III, alpha subunit; Psort location: Cytoplasmic, score:9.97. (1161 aa)    
Predicted Functional Partners:
dnaN
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 
 0.991
holA
KEGG: gme:Gmet_2298 1.0e-28 DNA polymerase III, delta subunit K02340; COG: COG1466 DNA polymerase III, delta subunit; Psort location: Cytoplasmic, score:8.96.
  
 0.991
EDN01733.1
KEGG: gsu:GSU2230 9.7e-31 holB; DNA polymerase III, delta prime subunit K02341; COG: COG0470 ATPase involved in DNA replication; Psort location: Cytoplasmic, score:8.96.
 
 0.990
EDN00937.1
KEGG: cpe:CPE1401 2.5e-32 probable DNA polymerase III epsilon chain K02342; COG: COG0847 DNA polymerase III, epsilon subunit and related 3-5 exonucleases; Psort location: Cytoplasmic, score:8.96.
   
 0.990
dnaX
DNA polymerase III, subunit gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
 
 0.988
EDM99271.1
KEGG: mga:MGA_0401 7.7e-20 dnaX; DNA polymerase III K02343; COG: COG2812 DNA polymerase III, gamma/tau subunits.
 
 0.986
EDM99653.1
KEGG: shn:Shewana3_3590 9.5e-17 single-strand binding protein K00655; COG: COG0629 Single-stranded DNA-binding protein.
 
 
 0.898
EDN01991.1
COG: COG0629 Single-stranded DNA-binding protein.
   
 0.877
EDN01070.1
COG: COG0629 Single-stranded DNA-binding protein.
   
 0.873
EDN00430.1
COG: COG0629 Single-stranded DNA-binding protein.
   
 0.873
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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