STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM98790.1Transporter, major facilitator family protein; KEGG: gme:Gmet_0086 2.0e-15 2-acyl-glycerophospho-ethanolamine acyltransferase K05939:K01909; COG: COG0477 Permeases of the major facilitator superfamily; Psort location: CytoplasmicMembrane, score:10.00. (419 aa)    
Predicted Functional Partners:
EDM98789.1
KEGG: bpm:BURPS1710b_A2293 1.6e-06 TetR-family regulatory protein K00356; COG: COG1309 Transcriptional regulator.
 
     0.848
aroK-2
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
  
 
 0.812
EDM98987.1
Prephenate dehydratase; KEGG: sth:STH2692 1.0e-51 chorismate mutase/prephenate dehydratase K04518; COG: COG0077 Prephenate dehydratase; Psort location: Cytoplasmic, score:9.97.
  
 
 0.796
EDM98824.1
KEGG: ctc:CTC01806 3.2e-183 5-methyltetrahydrofolate--homocysteine methyltransferase K00548; COG: COG1410 Methionine synthase I, cobalamin-binding domain; Psort location: Cytoplasmic, score:8.96.
   
 
  0.769
EDN00344.1
Efflux transporter, RND family, MFP subunit; KEGG: sde:Sde_2572 0.00033 hypothetical protein K00658; COG: COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.658
EDN02002.1
Hypothetical protein; KEGG: nma:NMA0905 5.5e-11 iga; IgA1 protease K01347; COG: COG0419 ATPase involved in DNA repair.
 
 
 0.607
gltA
KEGG: gka:GK1431 0. glutamate synthaselarge subunit K00265; COG: COG0069 Glutamate synthase domain 2; Psort location: Cytoplasmic, score:8.96.
     
 0.559
EDM98501.1
HD domain protein; KEGG: ava:Ava_1777 1.3e-20 metal dependent phosphohydrolase, HD region with response regulator receiver modulation K07814; COG: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; Psort location: Cytoplasmic, score:8.96.
     
 0.552
EDM98791.1
Hypothetical protein; COG: COG2155 Uncharacterized conserved protein.
       0.533
EDM97800.1
Hypothetical protein; KEGG: rsp:RSP_3191 6.1e-63 fprA; flavodoxin; COG: COG0426 Uncharacterized flavoproteins; Psort location: Cytoplasmic, score:9.26.
 
  
 0.513
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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