STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM98822.1Hypothetical protein. (38 aa)    
Predicted Functional Partners:
EDM98823.1
KEGG: tte:TTE0077 2.7e-51 Uracil-DNA glycosylase K02334; COG: COG1573 Uracil-DNA glycosylase; Psort location: Cytoplasmic, score:8.96.
       0.773
EDM98824.1
KEGG: ctc:CTC01806 3.2e-183 5-methyltetrahydrofolate--homocysteine methyltransferase K00548; COG: COG1410 Methionine synthase I, cobalamin-binding domain; Psort location: Cytoplasmic, score:8.96.
       0.773
EDM98825.1
Vitamin B12 dependent methionine synthase, activation domain protein; KEGG: ctc:CTC01807 4.6e-24 putative 5-methyltetrahydrofolate--homocysteine methyltransferase K00548; COG: NOG21937 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
       0.757
metF
KEGG: mxa:MXAN_3039 1.3e-58 metF; 5,10-methylenetetrahydrofolate reductase; COG: COG0685 5,10-methylenetetrahydrofolate reductase; Psort location: Cytoplasmic, score:8.96.
       0.757
EDM98821.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.96.
       0.615
EDM98827.1
Hypothetical protein.
       0.572
EDM98820.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.96.
       0.531
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.