STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM98876.1DNA-binding helix-turn-helix protein; KEGG: mmo:MMOB3450 7.5e-05 dam; adenine-specific DNA methyltransferase K06223; COG: COG1396 Predicted transcriptional regulators; Psort location: CytoplasmicMembrane, score:9.46. (296 aa)    
Predicted Functional Partners:
EDN01459.1
DNA-binding helix-turn-helix protein; COG: COG1396 Predicted transcriptional regulators; Psort location: Cytoplasmic, score:8.96.
  
     0.716
EDN01127.1
DNA-binding helix-turn-helix protein; KEGG: rba:RB12434 1.7e-05 ogt; O-GlcNAc transferase K00754; COG: COG1396 Predicted transcriptional regulators; Psort location: Cytoplasmic, score:8.96.
  
     0.697
EDM98875.1
Hypothetical protein.
       0.572
EDM98874.1
Hypothetical protein.
       0.519
cinA
Competence/damage-inducible domain protein CinA; KEGG: mmu:319945 5.5e-07 Flad1; RFad1, flavin adenine dinucleotide synthetase, homolog (yeast) K00953; COG: COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; Psort location: Cytoplasmic, score:8.96; Belongs to the CinA family.
    
 0.435
EDM97399.1
DNA-binding helix-turn-helix protein; KEGG: reh:H16_A1411 2.4e-05 shikimate kinase containing a XRE-type HTH DNA-binding domain K00924; COG: NOG36343 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
  
     0.433
EDM98871.1
Hypothetical protein.
       0.424
EDM98872.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: spj:MGAS2096_Spy1752 2.0e-48 ihk; two-component system histidine kinase; COG: COG0642 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score:9.82.
       0.424
EDM98873.1
Response regulator receiver domain protein; KEGG: fal:FRAAL1628 2.8e-33 response regulator in two-component regulatory system; COG: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; Psort location: Cytoplasmic, score:9.97.
       0.424
EDM99601.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.96.
   
   0.404
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.