STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM98464.1TRAP transporter, DctQ-like membrane protein; COG: COG3090 TRAP-type C4-dicarboxylate transport system, small permease component; Psort location: CytoplasmicMembrane, score:9.50. (179 aa)    
Predicted Functional Partners:
EDM98463.1
TRAP transporter, DctM subunit; COG: COG1593 TRAP-type C4-dicarboxylate transport system, large permease component; Psort location: CytoplasmicMembrane, score:10.00.
 
 0.998
EDM98465.1
TRAP transporter solute receptor, DctP family; COG: COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component; Psort location: Periplasmic, score:9.76.
 
  
 0.966
EDM98462.1
Putative endoribonuclease L-PSP; KEGG: ape:APE_1501.1 5.3e-23 ribonuclease UK114; COG: COG0251 Putative translation initiation inhibitor, yjgF family.
       0.555
EDN02105.1
FCD domain protein; KEGG: bcz:BCZK3833 3.2e-07 transcriptional regulator, GntR family; COG: COG2186 Transcriptional regulators; Psort location: Cytoplasmic, score:8.96.
 
   
 0.451
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.